In this FICO Configuration activity we are able to maintain and enable payment methods per company code. There also a few options which are maintained on this level which you could see below.
IMG Path: Financial Accounting (New) -> Accounts Receivable and Accounts Payable -> Business Transactions -> Outgoing Payments -> Automatic Outgoing Payments -> Payment Method/Bank Selection for Payment Program -> Set Up Payment Methods per Company Code for Payment Transactions
Tables: T042E, T042Z, T001
After starting the transaction you will see initially a list with company codes and assigned payment methods.
In the new entry/change screen you will see following options.